Gene detail

BMYCO0001_RS04545

Histidine kinase, Classic

Bacillus mycoides DSM 2048 · GCF_000003925

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000003925#BMYCO0001_RS04545Stable P2CS identifier used across views.

GenomeGCF_000003925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_2397554Run 6 · 67 sequences · id 100% · cov 80% · representative

External referencesWP_002168979.1 · A0AAP7W4T4 · MIST4 BMYCO0001_RS04545RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

HisKA_3HATPase_c

Protein length405 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage155 / 405 aa (38.3%)Merged over positioned domains only.

Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa405 aa

Domain-by-domain annotation2 items

1 HisKA_3#1

199-266 aa · 68 aa · 16.8% of protein

Raw tokenHisKA_3:199:8.6e-18:266:68:68

2 HATPase_c#2

309-395 aa · 87 aa · 21.5% of protein

Raw tokenHATPase_c:309:0.000000000000014:395:100:109

Raw architecture: HisKA_3:199:8.6e-18:266:68:68#HATPase_c:309:0.000000000000014:395:100:109
Domain description: 1 HisKA_3,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000003925::NZ_CM000742.1::G00015

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span910495-912346Genomic interval covered by the local TCS group.

Identifiers

Old locus tagbmyco0001_8770RefSeq proteinWP_002168979.1

Context group IDGCF_000003925::NZ_CM000742.1::G00015

Context members

BMYCO0001_RS04545BMYCO0001_RS04550

Partner locus tags

BMYCO0001_RS04545BMYCO0001_RS04550

Partner old locus tags

bmyco0001_8770bmyco0001_8780

Partner protein IDs

WP_002168979.1 WP_002087211.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_002168979.1Primary protein accession used for annex mappings.

UniProt accessionA0AAP7W4T4Primary UniProt accession resolved in the annex database.

UniProt IDA0AAP7W4T4_BACMYDisplay identifier provided by UniProt.

GO / PubMed3 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0016020 GO:0000155 GO:0046983

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagBMYCO0001_RS04545Primary locus identifier stored in the genes table.

Old locus tagbmyco0001_8770Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.

Genomic interval910 495-911 712 nt1 218 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span910 495-912 346 ntGCF_000003925::NZ_CM000742.1::G00015

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000003925::NZ_CM000742.1::G00015

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.

Neighborhood span910 495-912 346 nt1 852 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

910 495 nt912 346 nt

+-BMYCO0001_RS04545 BMYCO0001_RS04550

Neighborhood gene cards

2 genes in the current local neighborhood.

BMYCO0001_RS04545GCF_000003925#BMYCO0001_RS04545

HKClassicCurrent focus

910 495-911 712 nt · Forward (+)

Old locus bmyco0001_8770RefSeq WP_002168979.1

Open current gene

BMYCO0001_RS04550GCF_000003925#BMYCO0001_RS04550

RRNarL

911 702-912 346 nt · Forward (+)

Old locus bmyco0001_8780RefSeq WP_002087211.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2397554HK

Run 667 sequencesid 100%cov 80%

PFAM HisKA_3 + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_2397554Run 6 · HK · 67 sequences

Representative sequenceGCF_000003925#BMYCO0001_RS04545The current gene is the representative for this cluster.

PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_2397554

Simplified PFAM architecture for HKOC_2397554

PFAM domain coverage: 157 / 405 aa (38.8%)

1 aa405 aa

HisKA_3HATPase_c

Simplified architecture: HisKA_3 + HATPase_c
Raw architecture: HisKA_3[199-265] | HATPase_c[307-396]
Domain count: 2
Matched identifier: HKOC_2397554
Positioned domains: HisKA_3 199-265 ; HATPase_c 307-396

Cluster members and taxonomy

Representative gene: GCF_000003925#BMYCO0001_RS04545

Displayed with 5 columns and 10 rows per page from the local display config.

Showing members 1 to 50 over 67 total members. Page 1 / 2.

GCF_000003925#BMYCO0001_RS04545 (representative) BMYCO0001_RS04545 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_000290695#IKM_RS21580 IKM_RS21580 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_000290895#III_RS21450 III_RS21450 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_000399045#IKK_RS04380 IKK_RS04380 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_000517985#C174_RS18500 C174_RS18500 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_000832605#BG05_RS25960 BG05_RS25960 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_001044935#TU70_RS15145 TU70_RS15145 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_001484805#M2E15_RS00085 M2E15_RS00085 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_001484805#M2E15_RS04410 M2E15_RS04410 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_002014505#BW899_RS00160 BW899_RS00160 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_002014545#BW891_RS09725 BW891_RS09725 · HK · Classic RefSeq: WP_078178153.1	GCF_002014695#BLW98_RS06465 BLW98_RS06465 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_002014715#BGP34_RS04565 BGP34_RS04565 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_002021835#BW894_RS11905 BW894_RS11905 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_002118175#S2E19_RS27850 S2E19_RS27850 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_002118185#BTJ48_RS22305 BTJ48_RS22305 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_002118195#S3E15_RS27040 S3E15_RS27040 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_002200005#CEU84_RS12290 CEU84_RS12290 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_002554935#CN600_RS30000 CN600_RS30000 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_002909185#BACWE_RS13695 BACWE_RS13695 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_002909205#BAWEI_RS26990 BAWEI_RS26990 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_007673715#FS506_RS06935 FS506_RS06935 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_015845385#ABD98_RS12715 ABD98_RS12715 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_016117755#I6G81_RS05745 I6G81_RS05745 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_016483175#JDS93_RS10835 JDS93_RS10835 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_018736745#EXW35_RS05240 EXW35_RS05240 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_018739445#EXW32_RS05260 EXW32_RS05260 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_018741145#EXW44_RS03765 EXW44_RS03765 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_018741565#EXW47_RS05205 EXW47_RS05205 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_018741645#EXW43_RS05910 EXW43_RS05910 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_018742185#J5V93_RS03735 J5V93_RS03735 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_018742285#EXW57_RS05290 EXW57_RS05290 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_018751995#EXW36_RS05270 EXW36_RS05270 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_021097345#AR454_RS13315 AR454_RS13315 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_024297165#NMG90_RS10680 NMG90_RS10680 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_025809295#LCF45_RS05315 LCF45_RS05315 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_029024805#PYW38_RS05360 PYW38_RS05360 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_031316615#FO524_RS21265 FO524_RS21265 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_031324095#RGW67_RS05910 RGW67_RS05910 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036209605#P4T46_RS24825 P4T46_RS24825 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_036209615#P4T51_RS22720 P4T51_RS22720 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036209645#P4U69_RS19405 P4U69_RS19405 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036209745#P4T54_RS09380 P4T54_RS09380 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036209765#P4T58_RS15155 P4T58_RS15155 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036209775#P4T62_RS24220 P4T62_RS24220 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4
GCF_036209805#P4T74_RS03705 P4T74_RS03705 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036209825#P4T71_RS21825 P4T71_RS21825 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036209845#P4T66_RS15840 P4T66_RS15840 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036211445#P4U46_RS19155 P4U46_RS19155 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4	GCF_036211485#P4U55_RS25785 P4U55_RS25785 · HK · Classic RefSeq: WP_002168979.1 UniProt: A0AAP7W4T4

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925

AssemblyASM392v1 · Chromosomehaploid

Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048

Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key