1 HisKA#1
199-256 aa · 58 aa · 14.2% of protein
Raw token
HisKA:199:0.00000000000236:256:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS01570
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength408 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003925#BMYCO0001_RS01570Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length408 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 408 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
302-406 aa · 105 aa · 25.7% of protein
Raw token
HATPase_c:302:5.99e-26:406:108:109- Raw architecture: HisKA:199:0.00000000000236:256:58:64#HATPase_c:302:5.99e-26:406:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003925::NZ_CM000742.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span286767-287993Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_3130RefSeq proteinWP_016121398.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00004Context members
BMYCO0001_RS01570
Partner locus tags
BMYCO0001_RS01570
Partner old locus tags
bmyco0001_3130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016121398.1Primary protein accession used for annex mappings.
UniProt accessionR8NL04Primary UniProt accession resolved in the annex database.
UniProt IDR8NL04_BACCXDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS01570Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_3130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval286 767-287 993 nt1 227 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span286 767-287 993 ntGCF_000003925::NZ_CM000742.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span286 767-287 993 nt1 227 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
286 767 nt287 993 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BMYCO0001_RS01570GCF_000003925#BMYCO0001_RS01570
HKClassicCurrent focus
286 767-287 993 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS01570The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2371215
Simplified PFAM architecture for HKOC_2371215
PFAM domain coverage: 326 / 408 aa (79.9%)
1 aa408 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-172] | HisKA[200-256] | HATPase_c[302-407]
- Domain count: 3
- Matched identifier: HKOC_2371215
- Positioned domains: MASE12 10-172 ; HisKA 200-256 ; HATPase_c 302-407
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS01570
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 30 over 30 total members. Page 1 / 1.
GCF_000003925#BMYCO0001_RS01570 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key