1 HAMP#1
200-263 aa · 64 aa · 12.8% of protein
Raw token
HAMP:200:0.0000000000622:263:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS01340
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS01340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 501 aa (47.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
276-343 aa · 68 aa · 13.6% of protein
Raw token
HisKA:276:0.00000000000000107:343:68:643 HATPase_c#3
390-497 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:390:1.95e-22:497:109:109- Raw architecture: HAMP:200:0.0000000000622:263:64:69#HisKA:276:0.00000000000000107:343:68:64#HATPase_c:390:1.95e-22:497:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231450-233640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_2340RefSeq proteinWP_016126477.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00002Context members
BMYCO0001_RS01335BMYCO0001_RS01340
Partner locus tags
BMYCO0001_RS01335BMYCO0001_RS01340
Partner old locus tags
bmyco0001_2330bmyco0001_2340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016126477.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GV01Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GV01_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS01340Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_2340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval232 135-233 640 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span231 450-233 640 ntGCF_000003925::NZ_CM000742.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span231 450-233 640 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 450 nt233 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS01335GCF_000003925#BMYCO0001_RS01335
RROmpR
231 450-232 151 nt · Forward (+)
BMYCO0001_RS01340GCF_000003925#BMYCO0001_RS01340
HKClassicCurrent focus
232 135-233 640 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS01340The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468129
Simplified PFAM architecture for HKOC_1468129
PFAM domain coverage: 219 / 501 aa (43.7%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[220-263] | HisKA[276-342] | HATPase_c[390-497]
- Domain count: 3
- Matched identifier: HKOC_1468129
- Positioned domains: HAMP 220-263 ; HisKA 276-342 ; HATPase_c 390-497
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS01340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key