1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000657:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0175_RS09165
Histidine kinase, Classic
Bifidobacterium longum subsp. longum ATCC 55813 · GCF_000003135
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003135#HMPREF0175_RS09165Stable P2CS identifier used across views.
GenomeGCF_000003135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000845:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000657:278:64:68#HATPase_c:325:0.0000000845:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003135::NZ_GG666849.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96963-98968Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0175_0380RefSeq proteinWP_007053402.1
Context group ID
GCF_000003135::NZ_GG666849.1::G00001Context members
HMPREF0175_RS09165HMPREF0175_RS09160
Partner locus tags
HMPREF0175_RS09165HMPREF0175_RS09160
Partner old locus tags
HMPREF0175_0380HMPREF0175_0381
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007053402.1Primary protein accession used for annex mappings.
UniProt accessionA0A5Q8B8Y1Primary UniProt accession resolved in the annex database.
UniProt IDA0A5Q8B8Y1_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0175_RS09165Primary locus identifier stored in the genes table.
Old locus tagHMPREF0175_0380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG666849.1Sequence record reported by the local genomic context database.
Genomic interval96 963-98 315 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 963-98 968 ntGCF_000003135::NZ_GG666849.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003135::NZ_GG666849.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG666849.1All displayed genes belong to this local TCS context.
Neighborhood span96 963-98 968 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 963 nt98 968 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0175_RS09165GCF_000003135#HMPREF0175_RS09165
HKClassicCurrent focus
96 963-98 315 nt · Forward (+)
HMPREF0175_RS09160GCF_000003135#HMPREF0175_RS09160
RRNarL
98 315-98 968 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS09165The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1962043
Simplified PFAM architecture for HKOC_1962043
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1962043
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS09165
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 17 over 17 total members. Page 1 / 1.
GCF_000003135#HMPREF0175_RS09165 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 548 480 · GCF_000003135
AssemblyASM313v1 · Scaffoldhaploid
Genome composition2 396 359 bp · 60,5% GCBifidobacterium longum subsp. longum ATCC 55813
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key