1 HATPase_c#1
283-397 aa · 115 aa · 29.0% of protein
Raw token
HATPase_c:283:3.41e-25:397:115:109P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0175_RS06405
Probable incomplete histidine kinase
Bifidobacterium longum subsp. longum ATCC 55813 · GCF_000003135
ClassHKTypeClassicLength397 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_000003135#HMPREF0175_RS06405Stable P2CS identifier used across views.
External referencesMIST4 HMPREF0175_RS06405MIST4
Domain signature
Compact overview inferred from the domain field
HATPase_c
Protein length397 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage115 / 397 aa (29.0%)Merged over positioned domains only.
Domain description1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa397 aa
Domain-by-domain annotation1 item
- Raw architecture: HATPase_c:283:3.41e-25:397:115:109
- Domain description: 1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Protein sequence
On-demand local amino-acid sequence in FASTA format
Protein sequence
On-demand local amino-acid sequence in FASTA format
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0175_RS06405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Genome neighborhood
Gene-centered window parsed directly from the configured gzipped GFF annotation
GCF_000003135 · NZ_GG666850.1Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Centered locusHMPREF0175_RS0640511 genes displayed around the current focus.
Configured flank5 upstream / downstreamWindow size loaded from config.ini.
Annotation sourceGCF_000003135.gff.gzResolved as <gff_root_dir>/<genome_id>/<genome_id>.gff.gz when available.
View modeGene-centered orderThis track keeps the current gene in the middle of the context window when possible.
Gene-centered contextFive upstream and five downstream genes can be shown when the configured flank count is set to 5.
Current geneHKRROther P2CSOutside P2CS
1
HMPREF0175_RS06430HMPREF0175_RS06430
2
HMPREF0175_RS06425lysS
3
HMPREF0175_RS06420menA
4
HMPREF0175_RS06415HMPREF0175_RS06415
5
HMPREF0175_RS06410phoU
7
HMPREF0175_RS06400HMPREF0175_RS06400
8
HMPREF0175_RS06395serC
9
HMPREF0175_RS06390HMPREF0175_RS06390
10
HMPREF0175_RS0109760HMPREF0175_RS0109760
11
HMPREF0175_RS06385HMPREF0175_RS06385
Neighborhood gene cards
11 genes in the current genome window.
HMPREF0175_RS06430HMPREF0175_RS06430
Outside P2CS
154 230-154 303 nt · 74 nt · Reverse (-)
HMPREF0175_RS06425lysS
Outside P2CS
154 508-156 190 nt · 1 683 nt · Forward (+)
lysine--tRNA ligase
HMPREF0175_RS06420menA
Outside P2CS
156 252-157 217 nt · 966 nt · Forward (+)
1,4-dihydroxy-2-naphthoate octaprenyltransferase
HMPREF0175_RS06415HMPREF0175_RS06415
Outside P2CS
157 277-158 017 nt · 741 nt · Forward (+)
phosphoglyceromutase
HMPREF0175_RS06410phoU
Outside P2CS
158 376-159 050 nt · 675 nt · Reverse (-)
phosphate signaling complex protein PhoU
HMPREF0175_RS06405HMPREF0175_RS06405
HKClassicCurrent focus
159 242-160 435 nt · 1 194 nt · Forward (+)
sensor histidine kinase
HMPREF0175_RS06400HMPREF0175_RS06400
Outside P2CS
160 560-160 814 nt · 255 nt · Reverse (-)
DUF2530 domain-containing protein
HMPREF0175_RS06395serC
Outside P2CS
160 944-162 086 nt · 1 143 nt · Reverse (-)
phosphoserine transaminase
HMPREF0175_RS06390HMPREF0175_RS06390
Outside P2CS
162 480-163 436 nt · 957 nt · Forward (+)
CHAP domain-containing protein
HMPREF0175_RS0109760HMPREF0175_RS0109760
Outside P2CS
163 649-164 396 nt · 748 nt · Forward (+)
NlpC/P60 family protein
HMPREF0175_RS06385HMPREF0175_RS06385
Outside P2CS
164 542-165 294 nt · 753 nt · Forward (+)
C40 family peptidase
3D Structure
No local structure root: /mnt/p2cs-s3/P2CS_WEB/DATAS/SP_CIF
No local CIF or PDB file was detected for this record.
No CIF or PDB file was found for IHKOC_111834 under /home/biam/MYTOOLS/p2cs-web/DATAS/MassiveFold/work/recovered_by_cluster_all_ranked/clusters.
No UniProt accession is available for this gene.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333765#MCC10034_RS08000Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture available0 domain in the representative PFAM annotation.
PFAM architecture for IHKOC_111834
Simplified PFAM architecture for IHKOC_111834
PFAM domain coverage: 0 / 397 aa (0.0%)
- Simplified architecture: N/A
- Domain count: 0
- Matched identifier: IHKOC_111834
Cluster members and taxonomy
Representative gene: GCF_004333765#MCC10034_RS08000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Bifidobacterium longum subsp. longum ATCC 55813
Taxonomy recordBifidobacterium longum subsp. longum ATCC 55813Taxon ID 548 480 · GCF_000003135
AssemblyASM313v1 · Scaffoldhaploid
Genome composition2 396 359 bp · 60,5% GCGenome size and GC content from the linked genome record.
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path1 lineage nodes
1Unknown
Related genes
Preview from the same derived genome key