1 HisKA#1
180-245 aa · 66 aa · 14.9% of protein
Raw token
HisKA:180:0.00000000032:245:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0175_RS00705
Histidine kinase, Classic
Bifidobacterium longum subsp. longum ATCC 55813 · GCF_000003135
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003135#HMPREF0175_RS00705Stable P2CS identifier used across views.
GenomeGCF_000003135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 443 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
316-428 aa · 113 aa · 25.5% of protein
Raw token
HATPase_c:316:8.33e-29:428:113:109- Raw architecture: HisKA:180:0.00000000032:245:66:64#HATPase_c:316:8.33e-29:428:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003135::NZ_GG666856.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span241142-243376Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0175_0216RefSeq proteinWP_007054795.1
Context group ID
GCF_000003135::NZ_GG666856.1::G00010Context members
HMPREF0175_RS00705HMPREF0175_RS00700
Partner locus tags
HMPREF0175_RS00705HMPREF0175_RS00700
Partner old locus tags
HMPREF0175_0216HMPREF0175_0217
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007054795.1Primary protein accession used for annex mappings.
UniProt accessionA0AB38IND7Primary UniProt accession resolved in the annex database.
UniProt IDA0AB38IND7_BIFLLDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0175_RS00705Primary locus identifier stored in the genes table.
Old locus tagHMPREF0175_0216Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG666856.1Sequence record reported by the local genomic context database.
Genomic interval241 142-242 473 nt1 332 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span241 142-243 376 ntGCF_000003135::NZ_GG666856.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003135::NZ_GG666856.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG666856.1All displayed genes belong to this local TCS context.
Neighborhood span241 142-243 376 nt2 235 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
241 142 nt243 376 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0175_RS00705GCF_000003135#HMPREF0175_RS00705
HKClassicCurrent focus
241 142-242 473 nt · Forward (+)
HMPREF0175_RS00700GCF_000003135#HMPREF0175_RS00700
RROmpR
242 672-243 376 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS00705The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2041484
Simplified PFAM architecture for HKOC_2041484
PFAM domain coverage: 176 / 443 aa (39.7%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_2041484
- Positioned domains: HisKA 180-244 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS00705
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 11 over 11 total members. Page 1 / 1.
GCF_000003135#HMPREF0175_RS00705 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 548 480 · GCF_000003135
AssemblyASM313v1 · Scaffoldhaploid
Genome composition2 396 359 bp · 60,5% GCBifidobacterium longum subsp. longum ATCC 55813
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key