1 Response_reg#1
4-59 aa · 56 aa · 77.8% of protein
Raw token
Response_reg:4:0.00000000000752:59:58:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0175_RS00070
Response regulator, CheY family
Bifidobacterium longum subsp. longum ATCC 55813 · GCF_000003135
ClassRRTypeCheYLength72 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003135#HMPREF0175_RS00070Stable P2CS identifier used across views.
GenomeGCF_000003135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length72 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage56 / 72 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.00000000000752:59:58:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003135::NZ_GG666942.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15-230Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0175_1564RefSeq proteinWP_302621201.1
Context group ID
GCF_000003135::NZ_GG666942.1::G00011Context members
HMPREF0175_RS00070
Partner locus tags
HMPREF0175_RS00070
Partner old locus tags
HMPREF0175_1564
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302621201.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0175_RS00070Primary locus identifier stored in the genes table.
Old locus tagHMPREF0175_1564Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG666942.1Sequence record reported by the local genomic context database.
Genomic interval15-230 nt216 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15-230 ntGCF_000003135::NZ_GG666942.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003135::NZ_GG666942.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG666942.1All displayed genes belong to this local TCS context.
Neighborhood span15-230 nt216 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 nt230 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0175_RS00070GCF_000003135#HMPREF0175_RS00070
RRCheYCurrent focus
15-230 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS00070The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2477746
Simplified PFAM architecture for RROC_2477746
PFAM domain coverage: 55 / 72 aa (76.4%)
1 aa72 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-58]
- Domain count: 1
- Matched identifier: RROC_2477746
- Positioned domains: Response_reg 4-58 ; Response_reg 4-58
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS00070
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_000003135#HMPREF0175_RS00070 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 548 480 · GCF_000003135
AssemblyASM313v1 · Scaffoldhaploid
Genome composition2 396 359 bp · 60,5% GCBifidobacterium longum subsp. longum ATCC 55813
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key