1 Response_reg#1
4-59 aa · 56 aa · 77.8% of protein
Raw token
Response_reg:4:0.00000000000752:59:58:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0175_RS00070
Response regulator, CheY family
Bifidobacterium longum subsp. longum ATCC 55813 · GCF_000003135
ClassRRTypeCheYLength72 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000003135#HMPREF0175_RS00070Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length72 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage56 / 72 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa72 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.00000000000752:59:58:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Protein sequence
On-demand local amino-acid sequence in FASTA format
Protein sequence
On-demand local amino-acid sequence in FASTA format
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000003135::NZ_GG666942.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15-230Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0175_1564RefSeq proteinWP_302621201.1
Context group ID
GCF_000003135::NZ_GG666942.1::G00011Context members
HMPREF0175_RS00070
Partner locus tags
HMPREF0175_RS00070
Partner old locus tags
HMPREF0175_1564
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302621201.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0175_RS00070Primary locus identifier stored in the genes table.
Old locus tagHMPREF0175_1564Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG666942.1Sequence record reported by the local genomic context database.
Genomic interval15-230 nt216 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15-230 ntGCF_000003135::NZ_GG666942.1::G00011
Quick actions
Genome neighborhood
Gene-centered window parsed directly from the configured gzipped GFF annotation
GCF_000003135 · NZ_GG666942.1Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Centered locusHMPREF0175_RS000701 genes displayed around the current focus.
Configured flank5 upstream / downstreamWindow size loaded from config.ini.
Annotation sourceGCF_000003135.gff.gzResolved as <gff_root_dir>/<genome_id>/<genome_id>.gff.gz when available.
View modeGene-centered orderThis track keeps the current gene in the middle of the context window when possible.
Gene-centered contextFive upstream and five downstream genes can be shown when the configured flank count is set to 5.
Current geneHKRROther P2CSOutside P2CS
Neighborhood gene cards
1 gene in the current genome window.
HMPREF0175_RS00070HMPREF0175_RS00070
RRCheYCurrent focus
15-230 nt · 216 nt · Forward (+)
LytR/AlgR family response regulator transcription factor
3D Structure
No local structure root: /mnt/p2cs-s3/P2CS_WEB/DATAS/SP_CIF
No local CIF or PDB file was detected for this record.
No CIF or PDB file was found for RROC_2477746 under /home/biam/MYTOOLS/p2cs-web/DATAS/MassiveFold/work/recovered_by_cluster_all_ranked/clusters.
No UniProt accession is available for this gene.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS00070The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2477746
Simplified PFAM architecture for RROC_2477746
PFAM domain coverage: 55 / 72 aa (76.4%)
1 aa72 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-58]
- Domain count: 1
- Matched identifier: RROC_2477746
- Positioned domains: Response_reg 4-58 ; Response_reg 4-58
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS00070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Bifidobacterium longum subsp. longum ATCC 55813
Taxonomy recordBifidobacterium longum subsp. longum ATCC 55813Taxon ID 548 480 · GCF_000003135
AssemblyASM313v1 · Scaffoldhaploid
Genome composition2 396 359 bp · 60,5% GCGenome size and GC content from the linked genome record.
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path1 lineage nodes
1Unknown
Related genes
Preview from the same derived genome key