P2CS-Web

Acholeplasma oculi

Bacteria · Mycoplasmatota · Mollicutes · Acholeplasmatales · Acholeplasmataceae · Acholeplasma

Strain: ATCC 27350

TCS census

Genome-level counts from the current P2CS annotation tables

All genes7Total predicted proteins linked to this genome record.

HK3Histidine kinase predictions in the genes table.

RR4Response regulator predictions in the genes table.

CheA0CheA-like kinase predictions in the genes table.

PP0Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_900166985Stable genome identifier used across P2CS views.

Genome nameAcholeplasma oculiNCBI organism name imported through the genome catalogue.

Strain / isolateATCC 27350Infraspecific name when supplied by the source assembly metadata.

Taxon ID35623NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyIMG-taxon 2585428188 annotated assembly · ScaffoldNo RefSeq category available for this record.

Composition1,60 Mb · 31,5% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN02745122Acholeplasma oculi

Taxonomy snapshotBacteria · Mycoplasmatota · Mollicutes · Acholeplasmatales · Acholeplasmataceae · AcholeplasmaUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK

Best-match statusspecies-match

Best speciesAcholeplasma oculi

Best type assemblyGCA_900444665.1

Best type categorytype

Best ANI99.97%

Best qcov99,1%

Best scov99,1%

Declared assemblyGCA_900444665.1

Declared organismAcholeplasma oculi

Declared categorytype

Declared ANI99.97%

genome_checkM

Completeness and contamination estimates

Completeness98,8%

Contamination1,7%

Marker setAcholeplasma

genome_genbank

Assembly and annotation metadata

Organism nameAcholeplasma oculi

Infraspecificstrain=ATCC 27350

WGS masterFUZK00000000.1

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2017-03-09

SubmitterDOE - JOINT GENOME INSTITUTE

Type materialassembly from type material

Groupbacteria

Ungapped size1 600 162

Replicons0

Scaffolds7

Contigs7

Annotation providerDOE - JOINT GENOME INSTITUTE

Annotation nameAnnotation submitted by DOE - JOINT GENOME INSTITUTE

Annotation date2017-03-09

Total genes1522

Protein-coding1449

Non-coding49

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (1) Pair (0) Triad (0) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (0)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_900166985.gff.gz · Sequence: GCF_900166985.1_IMG-taxon_2585428188_annotated_assembly_genomic.fna.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
1 (1 gene)	3 (6 genes)	0 (0 gene)	0 (0 gene)	0 (0 gene)	0 (0 gene)	0 (0 gene)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 7

HK3proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (3 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 3Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR4proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (4 proteins across 3 families) · Phylogenetic Tree · Data Heatmap

Genome total 4Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP0proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (0 proteins across 0 families) · Phylogenetic Tree · Data Heatmap

Genome total 0Database total 0Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

No pp / hpt proteins were predicted for this genome.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.