P2CS-Web

Dictyoglomus turgidum

Bacteria · Dictyoglomota · Dictyoglomia · Dictyoglomales · Dictyoglomaceae · Dictyoglomus

Strain: KUB_Bin05

TCS census

Genome-level counts from the current P2CS annotation tables

All genes18Total predicted proteins linked to this genome record.

HK8Histidine kinase predictions in the genes table.

RR9Response regulator predictions in the genes table.

CheA0CheA-like kinase predictions in the genes table.

PP1Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_023255795Stable genome identifier used across P2CS views.

Genome nameDictyoglomus turgidumNCBI organism name imported through the genome catalogue.

Strain / isolateKUB_Bin05Infraspecific name when supplied by the source assembly metadata.

Taxon ID513050NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyASM2325579v1 · ScaffoldNo RefSeq category available for this record.

Composition1,80 Mb · 34,0% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN17914482Dictyoglomus turgidum

Taxonomy snapshotBacteria · Dictyoglomota · Dictyoglomia · Dictyoglomales · Dictyoglomaceae · DictyoglomusUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK

Best-match statusspecies-match

Best speciesDictyoglomus turgidum

Best type assemblyGCA_000021645.1

Best type categorytype

Best ANI99.75%

Best qcov97,7%

Best scov94,9%

Declared assemblyGCA_000021645.1

Declared organismDictyoglomus turgidum DSM 6724

Declared categorytype

Declared ANI99.75%

Excluded from RefSeqderived from metagenome

genome_checkM

Completeness and contamination estimates

Completeness95,1%

Contamination0,2%

Marker setDictyoglomus

genome_genbank

Assembly and annotation metadata

Organism nameDictyoglomus turgidum

WGS masterJAGDVU000000000.1

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2022-05-06

SubmitterGenomic and Applied Microbiology & Goettingen Genomics Laboratory

Groupbacteria

Ungapped size1 802 238

Replicons0

Scaffolds36

Contigs36

Total genes0

Protein-coding0

Non-coding0

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

GenomeGCF_023255795

RepliconNZ_JAGDVU010000011.1

Length225,0 kb

Tracks261 genes · 2 TCS

Replicon

Zoom

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (1) Pair (0) Triad (0) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (1)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_023255795.gff.gz · Sequence: GCF_023255795.1_ASM2325579v1_genomic.fna.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
3 (3 genes)	5 (10 genes)	0 (0 gene)	0 (0 gene)	0 (0 gene)	0 (0 gene)	5 (5 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 18

HK8proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (8 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 8Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR9proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (9 proteins across 5 families) · Phylogenetic Tree · Data Heatmap

Genome total 9Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP1proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (1 proteins across 1 families) · Phylogenetic Tree · Data Heatmap

Genome total 1Database total 371 352Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.