P2CS-Web

Dictyoglomus thermophilum

Bacteria · Dictyoglomota · Dictyoglomia · Dictyoglomales · Dictyoglomaceae · Dictyoglomus

Strain: PYS_80_B

TCS census

Genome-level counts from the current P2CS annotation tables

All genes12Total predicted proteins linked to this genome record.

HK6Histidine kinase predictions in the genes table.

RR6Response regulator predictions in the genes table.

CheA0CheA-like kinase predictions in the genes table.

PP0Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_008244535Stable genome identifier used across P2CS views.

Genome nameDictyoglomus thermophilumNCBI organism name imported through the genome catalogue.

Strain / isolatePYS_80_BInfraspecific name when supplied by the source assembly metadata.

Taxon ID14NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyASM824453v1 · ContigNo RefSeq category available for this record.

Composition1,96 Mb · 33,5% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN12634886Dictyoglomus thermophilum

Taxonomy snapshotBacteria · Dictyoglomota · Dictyoglomia · Dictyoglomales · Dictyoglomaceae · DictyoglomusUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK

Best-match statusspecies-match

Best speciesDictyoglomus thermophilum

Best type assemblyGCA_000020965.1

Best type categorytype

Best ANI98.85%

Best qcov90,8%

Best scov90,9%

Declared assemblyGCA_000020965.1

Declared organismDictyoglomus thermophilum H-6-12

Declared categorytype

Declared ANI98.85%

genome_checkM

Completeness and contamination estimates

Completeness89,4%

Contamination5,8%

Marker setDictyoglomus

genome_genbank

Assembly and annotation metadata

Organism nameDictyoglomus thermophilum

Infraspecificstrain=PYS_80_B

WGS masterVTFL00000000.1

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2019-09-02

SubmitterAgharkar Research Institute

Groupbacteria

Ungapped size1 963 348

Replicons0

Scaffolds23

Contigs23

Annotation providerNCBI

Annotation nameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Annotation date2019-08-28

Total genes1926

Protein-coding1778

Non-coding50

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

GenomeGCF_008244535

RepliconNZ_VTFL01000001.1

Length649,7 kb

Tracks614 genes · 5 TCS

Replicon

Zoom

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (1) Pair (2) Triad (0) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (0)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_008244535.gff.gz · Sequence: GCF_008244535.1_ASM824453v1_genomic.fna.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
2 (2 genes)	4 (8 genes)	0 (0 gene)	0 (0 gene)	0 (0 gene)	0 (0 gene)	2 (2 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 12

HK6proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (6 proteins across 1 families) · Phylogenetic Tree · Data Heatmap

Genome total 6Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR6proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (6 proteins across 4 families) · Phylogenetic Tree · Data Heatmap

Genome total 6Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP0proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (0 proteins across 0 families) · Phylogenetic Tree · Data Heatmap

Genome total 0Database total 0Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

No pp / hpt proteins were predicted for this genome.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.