P2CS-Web

Haloplasma contractile SSD-17B

Bacteria · Mycoplasmatota · Mollicutes · Haloplasmatales · Haloplasmataceae · Haloplasma

Strain: SSD-17B

TCS census

Genome-level counts from the current P2CS annotation tables

All genes18Total predicted proteins linked to this genome record.

HK7Histidine kinase predictions in the genes table.

RR10Response regulator predictions in the genes table.

CheA0CheA-like kinase predictions in the genes table.

PP1Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_000215935Stable genome identifier used across P2CS views.

Genome nameHaloplasma contractile SSD-17BNCBI organism name imported through the genome catalogue.

Strain / isolateSSD-17BInfraspecific name when supplied by the source assembly metadata.

Taxon ID1033810NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyHLPCO_V2 · Contigreference genome

Composition3,40 Mb · 32,5% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN02472186Haloplasma contractile SSD-17B

Taxonomy snapshotBacteria · Mycoplasmatota · Mollicutes · Haloplasmatales · Haloplasmataceae · HaloplasmaUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK

Best-match statuslow-coverage

Best speciesClostridium combesii

Best type assemblyGCA_002749945.1

Best type categorytype

Best ANI81.84%

Best qcov0,1%

Best scov0,1%

Declared assemblysame

CommentAssembly is the type-strain, no match is expected

genome_checkM

Completeness and contamination estimates

Completeness98,1%

Contamination11,0%

Marker setMollicutes

genome_genbank

Assembly and annotation metadata

Organism nameHaloplasma contractile SSD-17B

Infraspecificstrain=SSD-17B

WGS masterAFNU00000000.2

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2013-09-12

SubmitterKing Abdullah University of Science and Technology (KAUS)

Type materialassembly from type material

Groupbacteria

Ungapped size3 404 505

Replicons0

Scaffolds34

Contigs34

Annotation providerKing Abdullah University of Science and Technology (KAUS)

Annotation nameAnnotation submitted by King Abdullah University of Science and Technology (KAUS)

Annotation date2014-03-19

Total genes3066

Protein-coding3035

Non-coding31

PubMed24324765;21705599

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

GenomeGCF_000215935

RepliconNZ_AFNU02000001.1

Length608,4 kb

Tracks546 genes · 4 TCS

Replicon

Zoom

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (2) Pair (1) Triad (0) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (0)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_000215935.gff.gz · Sequence: GCF_000215935.2_HLPCO_V2_genomic.fna.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
5 (5 genes)	6 (12 genes)	0 (0 gene)	0 (0 gene)	0 (0 gene)	0 (0 gene)	1 (1 gene)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 18

HK7proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (7 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 7Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR10proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (10 proteins across 4 families) · Phylogenetic Tree · Data Heatmap

Genome total 10Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP1proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (1 proteins across 1 families) · Phylogenetic Tree · Data Heatmap

Genome total 1Database total 371 352Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.