CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database gamma proteobacterium HdN1
 

gamma proteobacterium HdN1

Genome
 

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Total size (bp) 4587455
G + C content (%) 53.26
Coding sequences 3763
Coding density (%) 89.49
Average gene length (bp) 1091

Histidine domain Logo
Mean spacer hisKA - HATPase domains 45
Min spacer hisKA - HATPase domains 40
Max spacer hisKA - HATPase domains 134
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
52 19 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (47 + 2) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 22
Histidine Kinase, Hybrid 19
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 4
Possible incomplete Histidine Kinase 2
P2CS Predicted Response Regulators (42) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family VieA Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family VieA Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 1CheY 7CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 5
NtrC 4OmpR 7PglZ 0PilB 0PleD 2
PleD_VieA 4PrrA 0RpfG 1RsbU 2Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 5
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(3)
HisKa 1
Hpt 2

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