CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database butyrate-producing bacterium SSC/2
 

butyrate-producing bacterium SSC/2

Genome
 

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Total size (bp) 3114788
G + C content (%) 36.28
Coding sequences 2767
Coding density (%) 78.47
Average gene length (bp) 883

Histidine domain Logo
Mean spacer hisKA - HATPase domains 35
Min spacer hisKA - HATPase domains 16
Max spacer hisKA - HATPase domains 53
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
23 12 0 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (22 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 18
Histidine Kinase, Hybrid 4
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (24) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family Spo0A Family CheY Family OmpR Family NarL Family LytTR Family Spo0A Family CheY Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 1CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 4MerR 0NarL 2
NtrC 0OmpR 15PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 2TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 0
misPredicted TCS proteins (12)
misPredicted Histidine Kinase 8
misPredicted Response Regulator 4
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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