CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Xylella fastidiosa M23
 

Xylella fastidiosa M23

Genome
 

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Total size (bp) 2535690
G + C content (%) 51.76
Coding sequences 2161
Coding density (%) 79.4
Average gene length (bp) 932
Histidine domain Logo
Mean spacer hisKA - HATPase domains 51
Min spacer hisKA - HATPase domains 14
Max spacer hisKA - HATPase domains 133
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
15 9 0 0 0
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TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (14 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 9
Histidine Kinase, Hybrid 3
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (19) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family RpfG Family PleD_VieA Family VieA Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family RpfG Family PleD_VieA Family VieA Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 2CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 2
NtrC 2OmpR 5PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 1RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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Date : 19 April 2024, 1:42:08 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales