CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Xanthomonas oryzae pv. oryzae KACC 10331
 

Xanthomonas oryzae pv. oryzae KACC 10331

Genome
 

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Total size (bp) 4941439
G + C content (%) 63.7
Coding sequences 4065
Coding density (%) 79.23
Average gene length (bp) 963
Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 39
Max spacer hisKA - HATPase domains 54
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
51 19 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (38 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 25
Histidine Kinase, Hybrid 7
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (53) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 1CheY 10CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 6
NtrC 4OmpR 14PglZ 0PilB 0PleD 1
PleD_VieA 2PrrA 1RpfG 3RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 2VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 5
misPredicted TCS proteins (7)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 4
misPredicted Phosphotransfer Protein 2
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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Date : 28 April 2024, 1:15:36 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales