CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Xanthomonas oryzae pv. oryzae PXO99A
 

Xanthomonas oryzae pv. oryzae PXO99A

Genome
 

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Total size (bp) 5240075
G + C content (%) 63.63
Coding sequences 4988
Coding density (%) 81.75
Average gene length (bp) 859
Histidine domain Logo
Mean spacer hisKA - HATPase domains 43
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 133
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
61 20 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (44 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 28
Histidine Kinase, Hybrid 9
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 4
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (58) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 2CheY 13CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 7
NtrC 4OmpR 14PglZ 0PilB 0PleD 1
PleD_VieA 3PrrA 1RpfG 3RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 2VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 4
misPredicted TCS proteins (5)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 3
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(2)
HisKa 2
Hpt 0

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Date : 27 April 2024, 19:09:10 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales