CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Xanthomonas campestris pv. campestris str. 8004
 

Xanthomonas campestris pv. campestris str. 8004

Genome
 

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Total size (bp) 5148708
G + C content (%) 64.95
Coding sequences 4271
Coding density (%) 84.79
Average gene length (bp) 1022
Histidine domain Logo
Mean spacer hisKA - HATPase domains 43
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 133
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
56 23 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (52 + 2) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 29
Histidine Kinase, Hybrid 16
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 4
Possible incomplete Histidine Kinase 2
P2CS Predicted Response Regulators (55) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 2
CheC 0CheV 1CheY 13CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 8
NtrC 4OmpR 11PglZ 0PilB 0PleD 1
PleD_VieA 1PrrA 1RpfG 3RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 2VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 4
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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Date : 27 April 2024, 21:04:39 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales