CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Whalefall Sample #1

Metagenome
 
Total size (bp) 31805936
G + C content (%) 43.68
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 40
Min spacer hisKA - HATPase domains 11
Max spacer hisKA - HATPase domains 90
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (165 + 64)
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 150
Histidine Kinase, Hybrid 14
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 64
P2CS Predicted Response Regulators (429)
PrrA Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family MerR Family CheC Family unclassified Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family MerR Family CheC Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 2CheV 6CheY 190CitT 0CsrA 0
CyC-C 0FrzZ 3HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 9MerR 1NarL 13
NtrC 0OmpR 54PglZ 0PilB 0PleD 9
PleD_VieA 1PrrA 3RpfG 6RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 130
misPredicted TCS proteins (8)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 6
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(100)
HisKa 76
Hpt 24

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