CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Whalefall Sample #3

Metagenome
 
Total size (bp) 30784116
G + C content (%) 45.34
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 40
Min spacer hisKA - HATPase domains 17
Max spacer hisKA - HATPase domains 56
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (74 + 39)
Classic Hybrid Unorthodox Classic Hybrid Unorthodox
Histidine Kinase, Classic 68
Histidine Kinase, Hybrid 5
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 39
P2CS Predicted Response Regulators (213)
PrrA Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family CheV Family AmiR_NasR Family PleD Family CheY Family FrzZ Family unclassified Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family CheV Family AmiR_NasR Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 1CheY 92CitT 0CsrA 0
CyC-C 0FrzZ 4HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 13MerR 0NarL 7
NtrC 0OmpR 27PglZ 0PilB 0PleD 5
PleD_VieA 0PrrA 2RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 2unclassified 58
misPredicted TCS proteins (4)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 4
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(66)
HisKa 54
Hpt 12

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