CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Whalefall Sample #2

Metagenome
 
Total size (bp) 32347432
G + C content (%) 52.38
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 13
Max spacer hisKA - HATPase domains 83
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (81 + 54)
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 77
Histidine Kinase, Hybrid 4
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 54
P2CS Predicted Response Regulators (264)
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family AmiR_NasR Family PleD Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family AmiR_NasR Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 2ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 141CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 11MerR 0NarL 16
NtrC 1OmpR 16PglZ 0PilB 0PleD 3
PleD_VieA 0PrrA 3RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 2unclassified 67
misPredicted TCS proteins (20)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 14
misPredicted Phosphotransfer Protein 5
Phosphotransfer Proteins(79)
HisKa 61
Hpt 18

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