CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Vibrio parahaemolyticus O1:K33 str. CDC_K4557
 

Vibrio parahaemolyticus O1:K33 str. CDC_K4557

Genome
 

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Total size (bp) 1806995
G + C content (%) 45.44
Coding sequences 1609
Coding density (%) 86.86
Average gene length (bp) 975
Histidine domain Logo
Mean spacer hisKA - HATPase domains 38
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 55
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
16 15 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (23 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox Classic Hybrid Unorthodox
Histidine Kinase, Classic 15
Histidine Kinase, Hybrid 5
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (25) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheV Family PleD Family VieA Family CitT Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheV Family PleD Family VieA Family CitT Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 2CheY 0CitT 1CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 4
NtrC 2OmpR 7PglZ 0PilB 0PleD 1
PleD_VieA 0PrrA 2RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 4
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 27 April 2024, 22:20:35 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales