CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Uranium Contaminated Groundwater FW106

Metagenome
 
Total size (bp) 9554544
G + C content (%) 62.92
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 44
Min spacer hisKA - HATPase domains 14
Max spacer hisKA - HATPase domains 136
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (53 + 6)
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 43
Histidine Kinase, Hybrid 7
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 6
P2CS Predicted Response Regulators (104)
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family CheY Family FrzZ Family BetR Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family CheY Family FrzZ Family BetR Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 1CheB 2
CheC 0CheV 2CheY 42CitT 0CsrA 0
CyC-C 0FrzZ 3HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 12
NtrC 4OmpR 21PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 2RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 11
misPredicted TCS proteins (7)
misPredicted Histidine Kinase 2
misPredicted Response Regulator 5
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(11)
HisKa 7
Hpt 4

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