CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Trichodesmium erythraeum IMS101
 

Trichodesmium erythraeum IMS101

Genome
 

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Total size (bp) 7750108
G + C content (%) 34.15
Coding sequences 4451
Coding density (%) 59.93
Average gene length (bp) 1043
Histidine domain Logo
Mean spacer hisKA - HATPase domains 50
Min spacer hisKA - HATPase domains 45
Max spacer hisKA - HATPase domains 151
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
62 1 0 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (34 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 18
Histidine Kinase, Hybrid 12
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (29) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family CyC-C Family CheB Family RsbU Family PleD_VieA Family PleD Family CheY Family CheC Family unclassified Family OmpR Family NarL Family CyC-C Family CheB Family RsbU Family PleD_VieA Family PleD Family CheY Family CheC Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 1CheV 0CheY 7CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 3
NtrC 0OmpR 6PglZ 0PilB 0PleD 1
PleD_VieA 1PrrA 0RpfG 0RsbU 2Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 6
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 27 April 2024, 18:37:31 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales