CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Thioalkalivibrio sulfidophilus HL-EbGr7
 

Thioalkalivibrio sulfidophilus HL-EbGr7

Genome
 

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Total size (bp) 3464554
G + C content (%) 65.06
Coding sequences 3283
Coding density (%) 87.36
Average gene length (bp) 922
Histidine domain Logo
Mean spacer hisKA - HATPase domains 46
Min spacer hisKA - HATPase domains 42
Max spacer hisKA - HATPase domains 135
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
28 18 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (25 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 20
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (40) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 2CheY 4CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 3
NtrC 11OmpR 6PglZ 0PilB 0PleD 2
PleD_VieA 4PrrA 0RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 4
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 1
Hpt 1

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Date : 27 April 2024, 17:38:40 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales