CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Thermosediminibacter oceani DSM 16646
 

Thermosediminibacter oceani DSM 16646

Genome
 

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Total size (bp) 2280035
G + C content (%) 46.82
Coding sequences 2197
Coding density (%) 86.74
Average gene length (bp) 900
Histidine domain Logo
Mean spacer hisKA - HATPase domains 34
Min spacer hisKA - HATPase domains 14
Max spacer hisKA - HATPase domains 48
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
7 11 0 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (13 + 0) - Phylogenetic Tree - Data Heatmap
Classic CheA Classic CheA
Histidine Kinase, Classic 12
Histidine Kinase, Hybrid 0
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (16) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family CheY Family YcbB Family NtrC Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family CheY Family YcbB Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 2CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 2
NtrC 1OmpR 5PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 1YesN 2unclassified 0
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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Date : 18 April 2024, 4:27:52 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales