CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

TM7c

Metagenome
 
Total size (bp) 474179
G + C content (%) 39.1
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 29
Min spacer hisKA - HATPase domains 57
Max spacer hisKA - HATPase domains 57
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCS Organization
Orphan Pair Triad Tetrad Pentad+
62 25 1 0 Pentad 1
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (2 + 0)
Classic Classic
Histidine Kinase, Classic 2
Histidine Kinase, Hybrid 0
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (3)
OmpR Family CheY Family unclassified Family OmpR Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 1CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 0
NtrC 0OmpR 1PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 1
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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