CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Synechococcus sp. PCC 6312
 

Synechococcus sp. PCC 6312

Genome
 

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Total size (bp) 3697276
G + C content (%) 48.52
Coding sequences 3513
Coding density (%) 84.81
Average gene length (bp) 893
Histidine domain Logo
Mean spacer hisKA - HATPase domains 56
Min spacer hisKA - HATPase domains 41
Max spacer hisKA - HATPase domains 141
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
49 7 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (29 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 18
Histidine Kinase, Hybrid 8
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (37) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family RsbU Family PleD_VieA Family PleD Family CheY Family unclassified Family OmpR Family NarL Family RsbU Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 6CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 6
NtrC 0OmpR 10PglZ 0PilB 0PleD 3
PleD_VieA 2PrrA 0RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 9
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 1
Hpt 1

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Date : 27 April 2024, 19:53:19 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales