CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Syntrophobacter fumaroxidans MPOB
 

Syntrophobacter fumaroxidans MPOB

Genome
 

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Total size (bp) 4990251
G + C content (%) 59.95
Coding sequences 4064
Coding density (%) 82.23
Average gene length (bp) 1010
Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 28
Max spacer hisKA - HATPase domains 68
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
78 22 4 2 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (72 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 49
Histidine Kinase, Hybrid 22
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (69) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CheB Family RpfG Family PleD_VieA Family PleD Family CheY Family TrxB Family IclR Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CheB Family RpfG Family PleD_VieA Family PleD Family CheY Family TrxB Family IclR Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 0CheY 24CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 1
LmbE 0LysR 0LytTR 0MerR 0NarL 4
NtrC 15OmpR 6PglZ 0PilB 0PleD 1
PleD_VieA 2PrrA 1RpfG 3RsbU 0Sarp 0
Spo0A 0TrxB 1VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 9
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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Date : 27 April 2024, 16:19:29 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales