CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Stigmatella aurantiaca DW4/3-1
 

Stigmatella aurantiaca DW4/3-1

Genome
 

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Total size (bp) 10260756
G + C content (%) 67.46
Coding sequences 8352
Coding density (%) 91.21
Average gene length (bp) 1121
Histidine domain Logo
Mean spacer hisKA - HATPase domains 41
Min spacer hisKA - HATPase domains 8
Max spacer hisKA - HATPase domains 94
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
223 41 8 1 Pentad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (192 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 119
Histidine Kinase, Hybrid 62
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 10
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (143) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family PleD Family CheY Family FrzZ Family MerR Family Xre Family VieB Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family CheV Family PleD Family CheY Family FrzZ Family MerR Family Xre Family VieB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 9
CheC 0CheV 1CheY 55CitT 0CsrA 0
CyC-C 4FrzZ 3HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 1NarL 6
NtrC 20OmpR 11PglZ 0PilB 0PleD 7
PleD_VieA 0PrrA 1RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 1WcaA 0
Xre 1YcbB 0YesN 0unclassified 20
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(3)
HisKa 2
Hpt 1

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Date : 27 April 2024, 16:24:11 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales