CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Starkeya novella DSM 506
 

Starkeya novella DSM 506

Genome
 

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Total size (bp) 4765023
G + C content (%) 67.89
Coding sequences 4431
Coding density (%) 88.55
Average gene length (bp) 952
Histidine domain Logo
Mean spacer hisKA - HATPase domains 41
Min spacer hisKA - HATPase domains 22
Max spacer hisKA - HATPase domains 51
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
34 21 3 2 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (43 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 33
Histidine Kinase, Hybrid 8
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (48) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CheB Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family VieA Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CheB Family CheV Family RsbU Family AmiR_NasR Family PleD_VieA Family VieA Family CheY Family unclassified Family
AlpA 0AmiR_NasR 2ArsR 0BetR 0CheB 1
CheC 0CheV 1CheY 7CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 8
NtrC 4OmpR 19PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 1RpfG 0RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(2)
HisKa 2
Hpt 0

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Date : 27 April 2024, 15:25:06 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales