CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Spirochaeta smaragdinae DSM 11293
 

Spirochaeta smaragdinae DSM 11293

Genome
 

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Total size (bp) 4653970
G + C content (%) 48.96
Coding sequences 4219
Coding density (%) 92.66
Average gene length (bp) 1022
Histidine domain Logo
Mean spacer hisKA - HATPase domains 34
Min spacer hisKA - HATPase domains 7
Max spacer hisKA - HATPase domains 104
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
75 38 1 2 Pentad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (91 + 4) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 66
Histidine Kinase, Hybrid 19
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 4
P2CS Predicted Response Regulators (71) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family YesN Family CheB Family RpfG Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family NtrC Family OmpR Family NarL Family YesN Family CheB Family RpfG Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 3
CheC 0CheV 0CheY 18CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 13
NtrC 4OmpR 11PglZ 0PilB 0PleD 2
PleD_VieA 1PrrA 0RpfG 1RsbU 2Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 7unclassified 8
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(4)
HisKa 2
Hpt 2

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Date : 28 April 2024, 0:33:45 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales