CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sphingomonas wittichii RW1
 

Sphingomonas wittichii RW1

Genome
 

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Total size (bp) 5382261
G + C content (%) 68.4
Coding sequences 4850
Coding density (%) 91.92
Average gene length (bp) 1020
Histidine domain Logo
Mean spacer hisKA - HATPase domains 41
Min spacer hisKA - HATPase domains 7
Max spacer hisKA - HATPase domains 57
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
43 19 0 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (37 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 26
Histidine Kinase, Hybrid 10
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (47) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family CheB Family AmiR_NasR Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family CheB Family AmiR_NasR Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 2
CheC 0CheV 0CheY 11CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 6
NtrC 4OmpR 14PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 7
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 27 April 2024, 16:39:04 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales