CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sphaerochaeta pleomorpha str. Grapes
 

Sphaerochaeta pleomorpha str. Grapes

Genome
 

Enlarge Image - Zoomable Map
Total size (bp) 3590853
G + C content (%) 46.2
Coding sequences 3159
Coding density (%) 89.78
Average gene length (bp) 1020
Histidine domain Logo
Mean spacer hisKA - HATPase domains 32
Min spacer hisKA - HATPase domains 12
Max spacer hisKA - HATPase domains 56
Quick Search
Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
11 21 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (26 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox Classic Hybrid Unorthodox
Histidine Kinase, Classic 23
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (33) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 0CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 1
NtrC 2OmpR 10PglZ 0PilB 0PleD 1
PleD_VieA 1PrrA 0RpfG 5RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 9unclassified 2
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

Locations of visitors to this page
Date : 27 April 2024, 23:05:02 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales