CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sphingobium japonicum UT26S
 

Sphingobium japonicum UT26S

Genome
 

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Total size (bp) 3514822
G + C content (%) 64.76
Coding sequences 3529
Coding density (%) 90.39
Average gene length (bp) 900
Histidine domain Logo
Mean spacer hisKA - HATPase domains 38
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 54
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
37 13 1 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (27 + 2) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 20
Histidine Kinase, Hybrid 6
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 2
P2CS Predicted Response Regulators (39) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family AmiR_NasR Family PleD_VieA Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family AmiR_NasR Family PleD_VieA Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 9CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 6
NtrC 4OmpR 9PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 1RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 5
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 2
Phosphotransfer Proteins(4)
HisKa 3
Hpt 1

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Date : 27 April 2024, 19:15:47 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales