CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sphaerochaeta globus str. Buddy
 

Sphaerochaeta globus str. Buddy

Genome
 

Enlarge Image - Zoomable Map
Total size (bp) 3316466
G + C content (%) 48.87
Coding sequences 3017
Coding density (%) 91.36
Average gene length (bp) 1004
Histidine domain Logo
Mean spacer hisKA - HATPase domains 27
Min spacer hisKA - HATPase domains 9
Max spacer hisKA - HATPase domains 51
Quick Search
Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
9 22 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (26 + 1) - Phylogenetic Tree - Data Heatmap
Classic Unorthodox Classic Unorthodox
Histidine Kinase, Classic 25
Histidine Kinase, Hybrid 0
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (30) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family YesN Family RpfG Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 1CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 4
NtrC 2OmpR 5PglZ 0PilB 0PleD 1
PleD_VieA 1PrrA 0RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 10unclassified 1
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

Locations of visitors to this page
Date : 28 April 2024, 1:53:17 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales