CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sphingobium chlorophenolicum L-1
 

Sphingobium chlorophenolicum L-1

Genome
 

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Total size (bp) 3080818
G + C content (%) 63.86
Coding sequences 2846
Coding density (%) 88.8
Average gene length (bp) 961
Histidine domain Logo
Mean spacer hisKA - HATPase domains 41
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 54
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
29 12 1 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (23 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 18
Histidine Kinase, Hybrid 4
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (33) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family AmiR_NasR Family PleD_VieA Family CheY Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family AmiR_NasR Family PleD_VieA Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 6CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 4
NtrC 4OmpR 9PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 1RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 4
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(4)
HisKa 3
Hpt 1

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Date : 27 April 2024, 19:12:51 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales