CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sorangium cellulosum So ce 56
 

Sorangium cellulosum So ce 56

Genome
 

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Total size (bp) 13033779
G + C content (%) 71.37
Coding sequences 9374
Coding density (%) 86.78
Average gene length (bp) 1207
Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 40
Max spacer hisKA - HATPase domains 66
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
172 36 6 1 Pentad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (149 + 2) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 95
Histidine Kinase, Hybrid 46
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 5
Possible incomplete Histidine Kinase 2
P2CS Predicted Response Regulators (119) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family CheB Family RpfG Family PleD Family CheY Family FrzZ Family Xre Family VieB Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family CheB Family RpfG Family PleD Family CheY Family FrzZ Family Xre Family VieB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 0CheY 39CitT 0CsrA 0
CyC-C 5FrzZ 3HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 3
NtrC 20OmpR 11PglZ 0PilB 0PleD 2
PleD_VieA 0PrrA 4RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 1WcaA 0
Xre 1YcbB 0YesN 0unclassified 26
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(2)
HisKa 2
Hpt 0

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Date : 27 April 2024, 17:16:42 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales