CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sorangium cellulosum So0157-2
 

Sorangium cellulosum So0157-2

Genome
 

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Total size (bp) 14782125
G + C content (%) 72.1
Coding sequences 10400
Coding density (%) 74.94
Average gene length (bp) 1065
Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 10
Max spacer hisKA - HATPase domains 129
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
191 43 3 0 Pentad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (157 + 3) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 100
Histidine Kinase, Hybrid 51
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 5
Possible incomplete Histidine Kinase 3
P2CS Predicted Response Regulators (132) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family PleD Family CheY Family FrzZ Family Xre Family VieB Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CyC-C Family LytTR Family CheB Family RpfG Family PleD Family CheY Family FrzZ Family Xre Family VieB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 4
CheC 0CheV 0CheY 49CitT 0CsrA 0
CyC-C 5FrzZ 4HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 4
NtrC 20OmpR 10PglZ 0PilB 0PleD 2
PleD_VieA 0PrrA 3RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 1WcaA 0
Xre 1YcbB 0YesN 0unclassified 25
misPredicted TCS proteins (16)
misPredicted Histidine Kinase 11
misPredicted Response Regulator 4
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 28 April 2024, 1:27:41 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales