CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Sludge/US, Phrap Assembly

Metagenome
 
Total size (bp) 56608360
G + C content (%) 59.6
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 132
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (186 + 34)
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 162
Histidine Kinase, Hybrid 16
Histidine Kinase, Unorthodox 4
Histidine Kinase, CheA 4
Possible incomplete Histidine Kinase 34
P2CS Predicted Response Regulators (331)
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 4
CheC 0CheV 6CheY 110CitT 0CsrA 0
CyC-C 0FrzZ 7HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 11MerR 0NarL 36
NtrC 15OmpR 46PglZ 0PilB 0PleD 8
PleD_VieA 8PrrA 4RpfG 9RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 3VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 62
misPredicted TCS proteins (446)
misPredicted Histidine Kinase 164
misPredicted Response Regulator 249
misPredicted Phosphotransfer Protein 33
Phosphotransfer Proteins(49)
HisKa 29
Hpt 20

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