CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Sludge/Australian, Phrap Assembly

Metagenome
 
Total size (bp) 53048954
G + C content (%) 54.44
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 44
Min spacer hisKA - HATPase domains 14
Max spacer hisKA - HATPase domains 135
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (207 + 16)
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 161
Histidine Kinase, Hybrid 32
Histidine Kinase, Unorthodox 6
Histidine Kinase, CheA 8
Possible incomplete Histidine Kinase 16
P2CS Predicted Response Regulators (273)
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family PglZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family VieA Family CheY Family FrzZ Family PglZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 3
CheC 0CheV 4CheY 89CitT 0CsrA 0
CyC-C 0FrzZ 4HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 8MerR 0NarL 22
NtrC 16OmpR 49PglZ 1PilB 0PleD 5
PleD_VieA 6PrrA 2RpfG 7RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 55
misPredicted TCS proteins (396)
misPredicted Histidine Kinase 170
misPredicted Response Regulator 203
misPredicted Phosphotransfer Protein 23
Phosphotransfer Proteins(36)
HisKa 25
Hpt 11

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