CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Sludge/US, Jazz Assembly

Metagenome
 
Total size (bp) 41128538
G + C content (%) 39.18
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 44
Min spacer hisKA - HATPase domains 16
Max spacer hisKA - HATPase domains 132
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (108 + 17)
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 92
Histidine Kinase, Hybrid 10
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 3
Possible incomplete Histidine Kinase 17
P2CS Predicted Response Regulators (174)
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family YesN Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 3CheY 59CitT 0CsrA 0
CyC-C 0FrzZ 3HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 7MerR 0NarL 20
NtrC 9OmpR 27PglZ 0PilB 0PleD 5
PleD_VieA 6PrrA 3RpfG 5RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 1unclassified 25
misPredicted TCS proteins (293)
misPredicted Histidine Kinase 119
misPredicted Response Regulator 154
misPredicted Phosphotransfer Protein 20
Phosphotransfer Proteins(24)
HisKa 17
Hpt 7

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