CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sinorhizobium medicae WSM419 plasmid pSMED02
 

Sinorhizobium medicae WSM419 plasmid pSMED02

Genome
 

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Total size (bp) 1245408
G + C content (%) 59.88
Coding sequences 1094
Coding density (%) 77.93
Average gene length (bp) 887
Histidine domain Logo
Mean spacer hisKA - HATPase domains 39
Min spacer hisKA - HATPase domains 27
Max spacer hisKA - HATPase domains 49
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
12 5 2 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (14 + 2) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 11
Histidine Kinase, Hybrid 2
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 2
P2CS Predicted Response Regulators (17) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family CheB Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family CheB Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 5CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 5
NtrC 1OmpR 4PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 1
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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Date : 25 April 2024, 16:34:17 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales