CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sinorhizobium meliloti GR4 plasmid pRmeGR4c
 

Sinorhizobium meliloti GR4 plasmid pRmeGR4c

Genome
 

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Total size (bp) 1417856
G + C content (%) 60.43
Coding sequences 1385
Coding density (%) 82.92
Average gene length (bp) 849
Histidine domain Logo
Mean spacer hisKA - HATPase domains 40
Min spacer hisKA - HATPase domains 42
Max spacer hisKA - HATPase domains 51
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
17 7 4 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (18 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 16
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (27) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family CyC-C Family CheB Family CheY Family unclassified Family OmpR Family NarL Family CyC-C Family CheB Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 8CitT 0CsrA 0
CyC-C 1FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 10
NtrC 0OmpR 5PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 2
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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Date : 27 April 2024, 19:40:18 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales