CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sinorhizobium fredii USDA 257
 

Sinorhizobium fredii USDA 257

Genome
 

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Total size (bp) 6476459
G + C content (%) 62.09
Coding sequences 6115
Coding density (%) 85.43
Average gene length (bp) 905
Histidine domain Logo
Mean spacer hisKA - HATPase domains 44
Min spacer hisKA - HATPase domains 22
Max spacer hisKA - HATPase domains 72
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
62 25 1 2 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (48 + 6) - Phylogenetic Tree - Data Heatmap
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 37
Histidine Kinase, Hybrid 9
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 6
P2CS Predicted Response Regulators (71) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CheB Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CheB Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 1
CheC 0CheV 0CheY 13CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 18
NtrC 6OmpR 22PglZ 0PilB 0PleD 2
PleD_VieA 1PrrA 1RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 5
misPredicted TCS proteins (5)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 3
misPredicted Phosphotransfer Protein 2
Phosphotransfer Proteins(2)
HisKa 1
Hpt 1

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Date : 27 April 2024, 23:17:43 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales