CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Sinorhizobium fredii HH103 plasmid pSfHH103e
 

Sinorhizobium fredii HH103 plasmid pSfHH103e

Genome
 

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Total size (bp) 2096125
G + C content (%) 62.38
Coding sequences 1963
Coding density (%) 86.95
Average gene length (bp) 928
Histidine domain Logo
Mean spacer hisKA - HATPase domains 47
Min spacer hisKA - HATPase domains 42
Max spacer hisKA - HATPase domains 72
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
14 11 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (15 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 9
Histidine Kinase, Hybrid 4
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (23) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family AmiR_NasR Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family AmiR_NasR Family CheY Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 2CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 10
NtrC 2OmpR 4PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 4
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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Date : 25 April 2024, 1:09:47 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales