CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Singapore Air Sample 1

Metagenome
 
Total size (bp) 35449373
G + C content (%) 51.88
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 41
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 58
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (121 + 43)
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 101
Histidine Kinase, Hybrid 17
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 43
P2CS Predicted Response Regulators (346)
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 2
CheC 0CheV 3CheY 143CitT 0CsrA 0
CyC-C 0FrzZ 4HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 5MerR 0NarL 21
NtrC 4OmpR 43PglZ 0PilB 0PleD 3
PleD_VieA 1PrrA 8RpfG 3RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 105
misPredicted TCS proteins (59)
misPredicted Histidine Kinase 11
misPredicted Response Regulator 34
misPredicted Phosphotransfer Protein 14
Phosphotransfer Proteins(83)
HisKa 73
Hpt 10

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