CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Singulisphaera acidiphila DSM 18658 plasmid pSINAC01
 

Singapore Air Sample 2

Metagenome
 
Total size (bp) 40148915
G + C content (%) 54.39
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 13
Max spacer hisKA - HATPase domains 56
Quick Search
Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCS Organization
Orphan Pair Triad Tetrad Pentad+
522 30 3 0 0
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (136 + 39)
Classic Hybrid CheA Classic Hybrid CheA
Histidine Kinase, Classic 104
Histidine Kinase, Hybrid 31
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 39
P2CS Predicted Response Regulators (335)
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family AmiR_NasR Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 3
CheC 0CheV 1CheY 155CitT 0CsrA 0
CyC-C 0FrzZ 5HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 3MerR 0NarL 24
NtrC 6OmpR 44PglZ 0PilB 0PleD 5
PleD_VieA 2PrrA 5RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 79
misPredicted TCS proteins (71)
misPredicted Histidine Kinase 21
misPredicted Response Regulator 30
misPredicted Phosphotransfer Protein 20
Phosphotransfer Proteins(71)
HisKa 54
Hpt 17

Locations of visitors to this page