CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Shewanella sediminis HAW-EB3
 

Shewanella sediminis HAW-EB3

Genome
 

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Total size (bp) 5517674
G + C content (%) 46.08
Coding sequences 4497
Coding density (%) 83.12
Average gene length (bp) 1020
Histidine domain Logo
Mean spacer hisKA - HATPase domains 38
Min spacer hisKA - HATPase domains 16
Max spacer hisKA - HATPase domains 56
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
44 39 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (58 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 42
Histidine Kinase, Hybrid 8
Histidine Kinase, Unorthodox 6
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (67) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD Family VieA Family CheY Family ArsR Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD Family VieA Family CheY Family ArsR Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 1BetR 0CheB 2
CheC 0CheV 4CheY 6CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 8
NtrC 8OmpR 20PglZ 0PilB 0PleD 4
PleD_VieA 0PrrA 1RpfG 4RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 1VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 5
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(3)
HisKa 0
Hpt 3

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Date : 27 April 2024, 21:59:19 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales