CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Shewanella sp. MR-4
 

Shewanella sp. MR-4

Genome
 

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Total size (bp) 4706287
G + C content (%) 47.9
Coding sequences 3924
Coding density (%) 85.76
Average gene length (bp) 1029
Histidine domain Logo
Mean spacer hisKA - HATPase domains 37
Min spacer hisKA - HATPase domains 13
Max spacer hisKA - HATPase domains 50
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
28 33 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (46 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 34
Histidine Kinase, Hybrid 5
Histidine Kinase, Unorthodox 5
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (53) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CitT Family CheY Family FrzZ Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CitT Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 3CheY 3CitT 1CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 2MerR 0NarL 9
NtrC 4OmpR 17PglZ 0PilB 0PleD 1
PleD_VieA 1PrrA 3RpfG 4RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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Date : 28 April 2024, 1:28:26 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales